Discussion:
[PyMOL] Helices as cylinder and ribbon - both in a single representation
Abhinav Verma
2010-05-14 10:19:34 UTC
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Hello,

I wish to show one chain in cylindrical helices, while the other one in
ribbon representation. How can I achieve this with pymol.

thanks in advance,
Abhi.
Robert Campbell
2010-05-14 12:58:02 UTC
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Hello Abhi,
Post by Abhinav Verma
I wish to show one chain in cylindrical helices, while the other one in
ribbon representation. How can I achieve this with pymol.
If the two chains are in one object, then you need to split them into two
objects. So if I'm working with the PDB file 1dvi, something like:

create cha, 1dvi & chain a
create chb, 1dvi & chain b

Then I can type:

set cartoon_cylindrical_helices, 1, chb

To make the chain B object have cylindrical helices, while chain A will
remain with the ribbon-style.

Cheers,
Rob
--
Robert L. Campbell, Ph.D.
Senior Research Associate/Adjunct Assistant Professor
Botterell Hall Rm 644
Department of Biochemistry, Queen's University,
Kingston, ON K7L 3N6 Canada
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